Verdin Lab

Eric Verdin, MD

President and Chief Executive Officer, Professor

Understanding epigenetic regulators of the aging process.

Lab focus

The Verdin lab studies the relationship between aging and the immune system. Aging is associated with defects in the adaptive immune system and with a state of chronic activation of the innate immune system (chronic inflammation).

We study how immune aging is regulated by nutrition. We have demonstrated how changes in the relative abundance of key cellular metabolites such as NAD+, acetylcoenzyme A, and the ketone body beta-hydroxybutyrate fluctuate under different nutritional conditions (obesity, calorie restriction, fasting, time-restricted feeding, ketogenic diet) and how this influences immune responses. We are working on key enzymes regulated by these metabolites. These include sirtuins (NAD+), histone acetyltransferases (acetylcoenzyme A), and histone deacetylases (HDACs).

We utilize worm, mice, and human model systems (including stem cells and iPSCs) to define how nutrients influence immune responses during aging. We are also studying how HIV infection induces a state of chronic inflammation and immune activation and how this induces accelerated aging in patients infected with HIV.

Why it matters

We believe chronic inflammation represents a key unifying factor underpinning the development of the chronic diseases of aging, including neurodegeneration (Parkinson’s and Alzheimer’s), cancer, type 2 diabetes, and atherosclerosis (heart attack and stroke). We are intrigued by possible connections between senescence, leaky gut, and innate immune activation. A better understanding of the mechanisms leading to the chronic inflammation associated with aging should provide novel therapeutic targets and potential interventions against human aging.

 

Science is showing that while chronological aging is inevitable, biological aging is malleable. There's a part of it that you can fight, and we are getting closer and closer to winning that fight.

Eric Verdin, MD

The Verdin lab is pleased to acknowledge the generous support of the following major funders:

Dr. Verdin is the president and chief executive officer of the Buck Institute for Research on Aging. A native of Belgium, Dr. Verdin received his Doctorate of Medicine (MD) from the University of Liege and completed additional clinical and research training at Harvard Medical School. He has held faculty positions at the University of Brussels, the National Institutes of Health (NIH), and the Picower Institute for Medical Research. Dr. Verdin is also a professor of medicine at University of California, San Francisco.

Dr. Verdin studies how metabolism, diet, and small molecules regulate the activity of HDACs and sirtuins, and thereby the aging process and its associated diseases, including Alzheimer’s. He has published more than 210 scientific papers and holds more than 15 patents. He is a highly cited scientist (top 1 percent) and has been recognized for his research with a Glenn Award for Research in Biological Mechanisms of Aging and a senior scholarship from the Ellison Medical Foundation. He is an elected member of several scientific organizations, including the American Association for the Advancement of Science, the American Society for Clinical Investigation, and the Association of American Physicians. He also serves on the advisory council of National Institute on Drug Abuse at the National Institutes of Health.

Dr. Verdin has extensive experience working with biotech companies. He is a founder of Acylin (purchased by Abbvie). He served on the scientific advisory boards of Elixir, Sirtris (purchased by GSK), Calico (Google), and Nokia, and he also served as advisor to Sofinnova Ventures. Dr. Verdin has also worked for several years as a consultant to Novartis, GSK, J&J, Altana, Roche, Pfizer, and other biotech companies.

  • Cristina Alexandru  PhD Candidate, USC-Buck Biology of Aging Program

    Cristina grew up in Romania. She earned her BSc in genetics from the University of Manchester, UK. Her thesis focused on the discovery of novel gene mutations causing Gorlin syndrome, a hereditary cancer syndrome. During her studies she completed a one year internship at the University of Nevada, Reno where she examined protein-protein interactions and protein phosphorylation involved in the regulation of stomach smooth muscle contractility. She joined the Verdin lab in June 2020.

    AAlexandru@buckinstitute.org

  • Nicolas Andrews, PhD  Senior Staff Scientist

    Nicolas earned his PhD in immunology from Emory University. There, he used a model of chronic viral infection to investigate the role of initial viral dose and early inflammatory signals in shaping the quality and magnitude of virus-specific T cell responses. His subsequent research encompassed topics as diverse as cancer biology, autoimmunity, recombinant antibody technology, and the role of chromatin structure in the DNA damage response. After a brief period in academia, Nicolas joined the Verdin lab in the summer of 2019 to study mechanisms that establish and maintain HIV latency. Additionally, he will investigate mechanisms that contribute to the accelerated aging phenotype of HIV-infected patients. When not in the lab, Nicolas enjoys trail running and exploring the backroads of California from the seat of a motorcycle.

    NAndrews@buckinstitute.org

  • Olga Bielska, PhD  Postdoctoral Research Fellow

    Olga obtained her BSc and MSc degrees in Biochemistry from the Taras Shevchenko National University of Kyiv in Ukraine. Then she moved to Germany to study Regenerative Biomedicine at the DFG-Center for Regenerative Therapies Dresden (CRTD). She conducted her Master thesis work in the US at the University of Florida and worked there for a year after her graduation from TU Dresden. In Florida, she mastered laser capture microdissection technique (LCMT) and established a staining protocol suitable for RNA isolation from human pancreatic islets of patients with type 1 diabetes for microarray analysis. She moved back to Europe to pursue her PhD degree in the Iargest research unit of France - Institute of Genetics and Molecular and Cellular Biology (IGBMC) affiliated with the University of Strasbourg. There she studied the signaling pathways that regulate mitochondrial dynamics during mitotic progression. Her passion to mitochondrial biology brought her to the lab of Eric Verdin. In the Buck, she studies how mitochondrial metabolism and function affect aging process in humans and mice. She likes gardening, photography, NBA games and interior design.

    OBielska@buckinstitute.org

  • Rachid Boutoual, PhD  Postdoctoral Research Scholar

    Dr. Boutoual grew up in Agadir, Morocco. He joined the Verdin lab in October, 2018, following his PhD in molecular and cellular biology from the University of Abdelmalek Essaadi, faculty of Sciences, Tetouan, Morocco. Rachid completed the majority of his studies for his Ph.D. work in the laboratory of Dr. Maria Eugenia Armengod at Principe Felipe Research Center, Valencia, Spain. His doctoral dissertation was focused on the understanding the molecular mechanisms of mitochondrial diseases associated with defects in the post-transcriptional modification of mitochondrial tRNAs catalyzed by the proteins TRMU, MTO1 and GTPBP3. Rachid is currently interested in the role of mitochondrial sirtuins, protein acylation and epigenetic regulation in aging. If time permits, he enjoys playing sports, especially football and swimming, long walks on the beach and of course as he is new to San Francisco, he enjoys exploring this city.

    RBoutoual@buckinstitute.org

  • Marlene Cervantes, PhD  Postdoctoral Research Fellow

    Marlene completed her PhD thesis in the laboratory of the late Dr. Paolo Sassone-Corsi at UC Irvine studying circadian transcription, metabolism and epigenetics. Since joining Dr. Eric Verdin’s lab as a postdoctoral fellow, her research interests have included aging, immunology, and investigating the metabolic consequences of HIV infection and substance abuse. When not in the lab, she enjoys jogging at the beach, visiting different coffee shops, and admiring the scenic views that the Bay Area has to offer.

    MCervantes@buckinstitute.org

  • Andrew Cruz  PhD Candidate, USC-Buck Biology of Aging Program

    Andrew grew up in Long Beach, California, and earned his bachelor’s degree in molecular cell biology from California State University, Long Beach. In his undergraduate lab, he probed structural aspects of Gα-interacting vesicle-associated protein, a signaling protein which plays a role in regulating cell migration and promoting cell survival. Andrew joined the Verdin lab in May 2018. He is interested in the factors that regulate nucleolus size and longevity. Outside of the lab, he enjoys reading, eating at new restaurants, and learning new songs on the ukulele.

    ACruz@buckinstitute.org

  • Alessia Grozio, PhD  Scientist

    Alessia earned her PhD in biochemistry at the University of Genoa in Italy where she studied the role of Sirtuin 6 in pancreatic ductal cancer and the extracellular generations of NAD+ precursors by ecto-enzymes in different cancer cell lines. In 2013, she moved to Washington University School of Medicine in St.Louis, where she worked on the characterization of a novel nicotinamide mononucleotide (NMN) transporter. In November 2019, Alessia joined Dr. Verdin lab to focus on the cellular and molecular mechanisms of aging. Outside the lab, Alessia enjoys traveling and shopping at flea markets.

    AGrozio@buckinstitute.org

  • Lauren Haky  Dominican University Graduate Student

    Lauren earned her bachelor’s degree in biology from Willamette University. During her time there, she participated in a collaborative large-scale mutagenetic screen using Drosophila melanogaster to target the Actin Depolymerizing Factor and cofilin ortholog slingshot. Lauren joined the Buck Institute in 2020 as a research associate in a female reproductive aging lab. In 2021, Lauren joined the Verdin lab as a Dominican University Master’s student. Lauren enjoys painting, hiking with her dog, debating art history theories and is learning to play the ukulele.

    LHaky@buckinstitute.org

  • Indra Heckenbach  PhD candidate, visiting scientist from University of Copenhagen

    Indra is pursuing a PhD with the University of Copenhagen. He has an MSc in biophysics and a background in software development. He is focused on applying deep learning and computational methods to aging research and biomedical sciences.

  • Vicki Hirth  Lab Technician

    Vicki has spent a career in the health industry working in physical therapy. Although retirement allows her to enjoy life to the fullest, her keen interest in science, healthspan, and wanting to contribute to her community initially brought her to the Buck Institute to volunteer. She also owned her own tennis retail store for 16 years before retiring. She enjoys coming to lab on a part time basis to support research projects through her organizational and cleaning skills. The lab has a good symbiotic relationship with her aptitude.

    VHirth@buckinstitiute.org

  • Herb Kasler, PhD  Research Assistant Professor, Flow Cytometry Core Director

    Dr. Kasler did his undergraduate work in biology at Duke University and earned his PhD in immunology from University of California, Berkeley, working on the regulation of cell death in T-cell development in the laboratory of Dr. Astar Winoto. Since joining the Verdin lab, his main area of focus has been elucidating the immunobiology of histone deacetylase 7 (HDAC7), an epigenetic regulator with an essential role in the maintenance of immune self-tolerance. With other members of the immunology group, he is working to define the molecular mechanisms whereby the TCR-dependent nuclear export of HDAC7 mediates both negative thymic selection and the differentiation of agonist-selected innate-like T-cell populations. By understanding the important role of HDAC7 in T-cell development, he hopes to gain new insights into the regulation of immune self-tolerance and also to identify novel molecular pathways that can be targeted in autoimmune disease. When he is not pushing back the frontier of human knowledge one miniprep at a time, he likes to cook fabulous food for his friends and family, hike through the many splendid landscapes surrounding the Bay Area, and play at being a suburban farmer.

    HKasler@buckinstitute.org

  • Ik-Jung Kim, PhD  Postdoctoral Research Scholar

    Dr. Kim is originally from South Korea. After earning an undergraduate and a master’s degree at Sogang university, he moved to the United States for a PhD training in the field of cellular microbiology. At the University of Illinois at Urbana-Champaign, he worked in Dr. Steven Blanke’s lab to study human infection with Helicobacter pylori, which he found manipulates host metabolism, resulting in a global metabolic shift from a biosynthetic to a catabolic state. As growing older, his deep interest in human metabolism stretched to aging biology and finally drew him to the Buck Institute. Since joining Verdin lab in February, 2019, he strive to understand how the levels of NAD+, a central metabolite involved in energy production and healthspan, are systemically regulated, using in vitro and in vivo models. Outside of the lab, he can be found exploring the beautiful nature in Northern California, or, pampering his hedgehog pets.

    IKim@buckinstitute.org

  • Prasanna Ashok Kumaar, PhD  Postdoctoral Research Fellow

    Dr. Ashok Kumaar graduated as a Topper with Masters in Biochemistry & Biotechnology from Annamalai University, India. She secured a competitive 5-year National Research Fellowship for pursing her PhD at Anna University, India. Her research focused on developing analytical methods and engineering yeast strains for production of therapeutic proteins and enzymes. Before joining the Buck, she worked as a Research Fellow at Washington State University developing mass spectrometry methods to quantify small molecule drugs and studying interactions between DNA repair and chaperone proteins. Her interest in mass spectrometry approaches to study metabolomic and proteomic changes during aging brought her to the Buck in 2020.

    PAshokKumaar@buckinstitute.org

  • Ryan Kwok  Research Associate

    Ryan grew up in Hong Kong. He earned his bachelor’s degree in Biology from Reed College where he wrote his thesis on the effects of the social environment on cichlid telomeres. Ryan joined the Verdin lab in 2019. He assists with various assays as well as maintaining the lab and mouse colony.

    RKwok@buckinstitute.org

  • Yong-Ho Lee  Visiting Scientist

    Dr. Yong-ho joined the Buck in February 2020, after completed his PhD degree in internal medicine at the Yonsei University, South Korea in 2014. From 2015 to 2019, he worked as an assistant professor in endocrinology department at the Severance Hospital, Yonsei University College of Medicine. He has studied on autophagy and inflammasomes to elucidate the mechanism of non-alcoholic steatohepatitis. His current research focuses on understanding the roles of inflammation and metabolism on aging and aging-related diseases.

    YLee@buckinstitute.org

  • Anne Marker  Dominican University Graduate Student

    Anne grew up in Frederick, Maryland and moved to California in 2016 to attend Saint Mary’s college of CA. She graduated with a BS in biochemistry in the spring of 2020. Following graduation, Anne joined the Verdin lab as a Dominican University Master’s student. Her research focuses on developing a new mouse model for accelerated aging based on dysfunctional mitochondria.

    AMarker@buckinstitute.org

  • Hiroyuki Matsui, PhD  Postdoctoral Research Fellow

    Dr. Matsui joined the Verdin lab in July, 2020. During his PhD, he performed transcriptome analysis of HIV-1 latently-infected cells at the Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University in Japan. He will continue studying the molecular mechanism establishing and maintaining HIV latency. Furthermore, he is interested in the relationship between HIV infection and accelerated aging phenotype of HIV-infected patients. Outside of the lab, he enjoys driving his car and playing with his kids.

    HMatsui@buckinstitute.org

  • Jazmin Morales  Research Associate

    Jazmin received her Bachelor of Science degree in Molecular Biology from Sonoma State University in 2018. During her time there she studied the significance of B cell survival in Non- Hodgkin’s Lymphoma. She used EMSA to study the interactions of B-Cell activating factor (BAFF) and its exclusive relationships to the maturation and survival of B Cells. In the Verdin lab her work is focused on measuring the replicative lifespan of Saccharomyces Cerevisiae via micro dissection.

    JMorales@buckinstitute.org

  • Oishika Panda, PhD  Postdoctoral Research Fellow

    Dr. Panda joined the Buck in February 2018, after her PhD in chemistry and chemical biology from Cornell University, Ithaca, New York. Having grown up in hot and humid Kolkata, India, and done her graduate studies in snowy-for-8-months-of-the-year Upstate New York, she has mixed feelings about the Bay Area weather! Dr. Panda is interested in applying her analytical chemistry skills to study the regulation of posttranslational acylations of proteins by endogenous metabolites, and their signaling functions. In her spare time, she enjoys trying out new cheesecake recipes, playing with cats and dogs, and discussing Harry Potter and Middle Earth trivia with whoever wants to listen!

    OPanda@buckinstitute.org

  • Rosalba Perrone, PhD  Lead Scientist

    Dr. Perrone joined the Verdin lab in January 2017. She earned her PhD in biomedicine at the University of Padua in Italy, studying innovative therapeutic targets at the HIV proviral level. In the Verdin lab, her original interest in HIV biology meets her new and exciting interest in aging. She’s working to investigate and elucidate mechanisms that link HIV infection and aging, since increasing evidence supports accelerated aging in HIV-positive patients. Science is not her only big passion. Rosalba loves to express herself through creative arts, primarily with belly dancing. She also loves everything that comes from her home country of Italy — especially the good food and music. Her first goal in life is to always be passionate, curious, and happy. Her motto is, “Resolve to be the sun!”

    RPerrone@buckinstitute.org

  • Leandro Prado, PhD  Postdoctoral Research Fellow

    Dr. Leandro joined the Verdin Lab in February 2021. He earned his PhD in physiology and pharmacology at the Federal University of Minas Gerais (UFMG) in Brazil, studying the effects of bradykinin-potentiating peptides in hindlimb ischemia model in diabetic animals. Also, he worked at Duke University and the University of California San Francisco (UCSF) studying the mechanisms and possible treatments for cerebrovascular diseases in the brain. Leandro loves sports in general but soccer, in particular, is his passion. Music, and philosophy are parts of his hobbies too.

    lprado@buckinstitute.org

  • Rebeccah Riley  Senior Research Associate, Verdin Lab Manager

    Rebeccah received her bachelor’s degree in molecular and cellular biology from UC Santa Cruz. Early on she began studying the mechanisms of the human papilloma virus using rodent models to understand the correlation between 17B-estradiol and cervical cancer at UCSF. She joined the Buck Institute in 2003 to continue research on novel cancer cell therapies and the role of stem cell maintenance in the aging process. Taking a leap more into management, she recently joined the Verdin lab in 2019 as the lab manager, providing support and expertise to a variety of personnel and projects. In her spare time she trains dogs for search and rescue, passionately trail rides her horses wherever and whenever she can, and enjoys raising two small boys in lovely Sonoma County.

    Please contact Rebeccah with any lab management requests for reagents, plasmids, mouse lines, or protocols.

    RRiley@buckinstitute.org

  • Daria Timonina  PhD Candidate, USC-Buck Biology of Aging Program

    Daria received her undergraduate degree in biochemistry from the University of Arizona. Her thesis focused on G-Quadruplexes, a naturally occurring secondary structure in DNA. After graduating, she worked as a laboratory technician at Massachusetts General Hospital, using patient samples to study potential lung cancer treatments. In her free time she enjoys snowboarding, climbing, and painting.

    DTimonina@buckinstitute.org

  • Ritesh Tiwari, PhD  Research Associate

    Dr. Tiwari completed his masters in biotechnology at Madurai Kamraj University and earned his PhD in immunology from National institute of Immunology, New Delhi, India in 2014 where he worked on the influence of impaired vesicular transport in Beige B cells response. Since then he has worked on multiple projects involving universities and industries helping them educate, design and analyse experimental data involving multi-color flow cytometry. He joined the Verdin lab in September 2019 and his work includes providing support to a diverse array of projects in the biology of aging, both by sorting cells and by helping with immunophenotyping and other types of analyses involving Flow cytometry as well as working on role of chromatin modifications, particularly histone acetylation, in immune aging and autoimmune disease. In his spare time he enjoys going for hike or bike ride with his fellow buck colleagues.

    RTiwari@buckinstitute.org

  • Marius Walter, PhD  Postdoctoral Research Fellow

    Dr. Walter grew up in the south of France and received a master’s degree from the Ecole Polytechnique in Paris. His PhD work at the Institut Curie in Paris focused on transposable element regulation during embryonic development. Marius joined the Verdin lab in September 2016 and has been working on using CRISPR genetic screens to uncover new mechanisms that regulate the establishment of HIV latency. He is also developing new therapeutic strategies against herpes viruses and has been particularly interested in cytomegalovirus. When not in the lab, Marius can be found climbing, skiing, biking, or backpacking in various parts of California. His diet consists almost exclusively of avocado, Pringles, and clementines.

    MWalter@buckinstitute.org

  • Ran Zhang, PhD  Postdoctoral Research Fellow

    Dr. Zhang grew up in Tongling, China, and joined the Verdin lab in September 2017. He holds a bachelor’s degree in clinical medicine and a PhD in biochemistry and molecular biology from the Chinese Academy of Medical Sciences and Peking Union Medical College. He is currently interested in epigenetic regulation of metabolism and aging. Ran enjoys hiking and cooking.

    RZhang@buckinstitute.org

  • Yini Zhang, PhD  Postdoctoral Research Fellow

    Dr. Zhang joined the Verdin lab in February, 2020. She earned her PhD in biochemistry and molecular biology at the Institute of Biophysics, Chinese Academy of Sciences, where she studied the details of the interaction between Ero1a and PDI, which are two ER-located proteins responsible for oxidative protein folding, and investigated the suppression of cervical cancer by targeting Ero1a-PDI interaction. She also studied the function and mechanism of S-nitrosalytion, a post-translational modification of Ero1a. In her free time, she enjoys traveling and reading.

    YZhang@buckinstitute.org

Rebeccah Riley
Senior Research Associate, Verdin Lab Manager
Please contact Rebeccah with any lab management requests for reagents, plasmids, mouse lines, or protocols.
RRiley@buckinstitute.org
Phone: 415-209-2000 x2882


Lauren Newman
Executive Administrative Assistant
Please contact Lauren for assistance with administrative needs such as scheduling appointments with Dr. Verdin.
LNewman@buckinstitute.org
Phone: 415.209.2229
Selected Publications
  • Verdin, E. (2015 Dec 4). NAD⁺ in aging, metabolism, and neurodegeneration. Science, 350(6265), 1208–13. DOI: 10.1126/science.aac4854. Review. PubMed PMID: 26785480.
  • Verdin, E., Ott, M. (2015 Apr). 50 years of protein acetylation: From gene regulation to epigenetics, metabolism and beyond. Nat Rev Mol Cell Biol, 16(4), 258–64. DOI: 10.1038/nrm3931. PubMed PMID: 25549891.
  • Gut, P., Verdin, E. (2013 Oct 24). The nexus of chromatin regulation and intermediary metabolism. Nature, 502(7472), 489–98. DOI: 10.1038/nature12752. Review. PubMed PMID: 24153302.
  • Shimazu, T., Hirschey, M. D., Newman, J., He, W., Shirakawa, K., Le Moan, N., Grueter, C. A., Lim, H., Saunders, L. R., Stevens, R. D., Newgard, C. B., Farese, R. V. Jr, de Cabo, R., Ulrich, S., Akassoglou, K., Verdin, E. (2013 Jan 11). Suppression of oxidative stress by β-hydroxybutyrate, an endogenous histone deacetylase inhibitor. Science, 339(6116), 211–4. DOI: 10.1126/science.1227166. PubMed PMID: 23223453. PubMed Central PMCID: PMC3735349.
  • Hirschey, M. D., Shimazu, T., Jing, E., Grueter, C. A., Collins, A. M., Aouizerat, B., Stančáková, A., Goetzman, E., Lam, M. M., Schwer, B., Stevens, R. D., Muehlbauer, M. J., Kakar, S., Bass, N. M., Kuusisto, J., Laakso, M., Alt, F. W., Newgard, C. B., Farese, R. V. Jr, Kahn, C. R., Verdin, E. (2011 Oct 21). SIRT3 deficiency and mitochondrial protein hyperacetylation accelerate the development of the metabolic syndrome. Mol Cell, 44(2), 177–90. DOI: 10.1016/j.molcel.2011.07.019. PubMed PMID: 21856199. PubMed Central PMCID: PMC3563434.
  • Hirschey, M. D., Shimazu, T., Goetzman, E., Jing, E., Schwer, B., Lombard, D. B., Grueter, C. A., Harris, C., Biddinger, S., Ilkayeva, O. R., Stevens, R. D., Li ,Y., Saha, A. K., Ruderman, N. B., Bain, J. R., Newgard, C. B., Farese, R. V. Jr, Alt, F. W., Kahn, C. R., Verdin, E. (2010 Mar 4). SIRT3 regulates mitochondrial fatty-acid oxidation by reversible enzyme deacetylation. Nature, 464(7285), 121–5. DOI: 10.1038/nature08778. PubMed PMID: 20203611. PubMed Central PMCID: PMC2841477.
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